Year

2024

Season

Fall

Paper Type

Master's Thesis

College

College of Arts and Sciences

Degree Name

Master of Science in Biology (MS)

Department

Biology

NACO controlled Corporate Body

University of North Florida. Department of Biology

First Advisor

Nikki Dix

Second Advisor

Brandon Puckett

Third Advisor

Scott Jones

Department Chair

Matthew Gilg

Abstract

Eastern oyster (Crassostrea virginica) reefs provide critical ecosystem services, including shoreline stabilization, water filtration, and habitat for diverse marine species. However, these reef habitats are declining globally due to overharvesting, disease, and environmental change. This study evaluated the effectiveness of in-situ vs drone-based methods for detecting differences in oyster reef structure focusing on percent live cover and rugosity as key indicators. We also compared these methods in terms of cost, effort, and variability. Using data collected from Northeast Florida on a variety of reef types exposed to various disturbances, we developed generalized linear models to evaluate for differences among five reefs and compared the precision and scalability of both methods. Results demonstrate that drone-based approaches detected differences in percent cover and rugosity among reefs that were expected to vary, while in-situ methods did not. We found drone-based methods to have a similar cost to in-situ based methods in long-term studies, require less personnel, and cover copious amounts of area while providing meaningful metrics. This research advances our understanding of long-term oyster reef monitoring techniques and highlights the necessity for new technology-driven conservation strategies to improve management and restoration outcomes. We conclude with recommendations for incorporating drone technology into comprehensive long-term monitoring programs, highlighting its potential as a minimally invasive, scalable solution for marine ecosystem monitoring.

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